python main.py Fig.S6B_Y0851-Cortex-GAA300_4wks_ABE_S6_L001_R1_001.fastq.gz out/Fig.S6B_Y0851-Cortex-GAA300_4wks_ABE_S6_L001_R1_001 -a GGGAGGCCTAGGAAGGTGGATCACCTGAGGTCCGGAGTTCAAGACTAACCTGGCCAACATGGTGAAACCCAGTATCTACTAAAAAATACAAAAAAAAAAAAAAAA(GAA|GRR)AATAAAGAAAAGTTAGCCGGGCGTGGTGTCGCGCGCCTGTAATCCCAGCTACTCCAGA -rc --no_trim -amas 80
python main.py Fig.S6B_Y0854-Cortex-GAA300_4wks_ABE_S9_L001_R1_001.fastq.gz out/Fig.S6B_Y0854-Cortex-GAA300_4wks_ABE_S9_L001_R1_001 -a GGGAGGCCTAGGAAGGTGGATCACCTGAGGTCCGGAGTTCAAGACTAACCTGGCCAACATGGTGAAACCCAGTATCTACTAAAAAATACAAAAAAAAAAAAAAAA(GAA|GRR)AATAAAGAAAAGTTAGCCGGGCGTGGTGTCGCGCGCCTGTAATCCCAGCTACTCCAGA -rc --no_trim -amas 80
python main.py Fig.S6B_Y0855-Cortex-GAA300_4wks_ABE_S12_L001_R1_001.fastq.gz out/Fig.S6B_Y0855-Cortex-GAA300_4wks_ABE_S12_L001_R1_001 -a GGGAGGCCTAGGAAGGTGGATCACCTGAGGTCCGGAGTTCAAGACTAACCTGGCCAACATGGTGAAACCCAGTATCTACTAAAAAATACAAAAAAAAAAAAAAAA(GAA|GRR)AATAAAGAAAAGTTAGCCGGGCGTGGTGTCGCGCGCCTGTAATCCCAGCTACTCCAGA -rc --no_trim -amas 80
python main.py Fig.S6B_Y0858-Cortex-GAA300_4wks_ABE_S3_L001_R1_001.fastq.gz out/Fig.S6B_Y0858-Cortex-GAA300_4wks_ABE_S3_L001_R1_001 -a GGGAGGCCTAGGAAGGTGGATCACCTGAGGTCCGGAGTTCAAGACTAACCTGGCCAACATGGTGAAACCCAGTATCTACTAAAAAATACAAAAAAAAAAAAAAAA(GAA|GRR)AATAAAGAAAAGTTAGCCGGGCGTGGTGTCGCGCGCCTGTAATCCCAGCTACTCCAGA -rc --no_trim -amas 80
